rs31405953 SNP Detail

Summary

• ID
  rs31405953
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30817537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCA GGAGGATGGG GACTGGGGGG
  Y
  CGGGGGGGGG GAACTACAGT CTGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46029415	mCV24562022	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss148699956	ENSMUSSNP730288	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31405953					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30817537 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18835	CpG island 18835	1988 bp distal
Scn1b	sodium channel, voltage-gated, type I, beta	within coordinates
Tssr71934	transcription start site region 71934	1208 bp upstream