rs31406754 SNP Detail

Summary

• ID
  rs31406754
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165468443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTAGAAT TACTGAATAT
  TATCCTAAAT GTCTATCATA AGCATCAAAG AGAAATGTTT AAAGACTTAA TATAGTTAAG
  AAGCTATGAC TTTTTTTTTT TTTAAATACA GAACCAAGGA GCCAGGCTCT TCTTCATATT
  GTTTCAATTT TAGCAAACAG TGTGAACTGC TGAAGAAACC ACAGGCTGTG ACTTCTTCAT
  K
  GCTAAGGATC ATGGGCAATC AGACCACAAC TACACAATTA GTTGCCACTT AAACAATAGA
  TTTAAGTTTG GTATTGGGTA TTTCGCCCCC CAAGAAATTA TGGGAGTCAA GTGTTGCAAC
  TCAGGCCCGG TTTGATGAAT GCTTTTAAAT AAATTAAATT AAAAATATAA AAATCACAGC
  CATTGCGAGG CAGAATTCGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49735460	NES13055370	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31406754					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49735460	NES13055370	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165468443 () rs orientation: forward

Symbol	Name	Function Class
Cpgi953	CpG island 953	948 bp proximal
n-TPagg2	nuclear encoded tRNA proline 2 (anticodon AGG)	760 bp upstream
n-TPcgg2	nuclear encoded tRNA proline 2 (anticodon CGG)	1397 bp downstream
Rr396497	regulatory region 396497	504 bp upstream
Rr396498	regulatory region 396498	1209 bp upstream
Rr422408	regulatory region 422408	689 bp proximal
Rr422409	regulatory region 422409	783 bp proximal