rs31406756 SNP Detail

Summary

• ID
  rs31406756
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165467592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGCCCACAAG CCAATCTGAT GGAGGCAATT CCTCAACTGA GGTTCCCTCT TTTTAGGTGA
  CTCTGGTTTC TGTCAAATTG ACGAGCGCAA ACCAGCACGG ACGCATCACA TTCCTTCTAC
  CAAGACAGGA AGCTTTTCCA CCAGAAGGCA TCCGCTACTA TGAATCTTTC TATCATCAGT
  CTCGTCCGTC ACTGCTACGA TAGATAAATG AGATGGTCTA GTATCTGGAA TGTAGAGAGA
  AAAGGACAAA ACTCCTTAGC TGGCCATGGT GGCTCACACT TGTAATAGCA GTGTGCAGGA
  R
  AACAAGGCCA GTGTGGCTGC AAAGGTCTGA GGATGTTCTA AGTTCCAGCG GGCTGCCCTG
  GATGGGGAGA AGATGCTAAC TGCTAGCTCT GGTGAATTCA AGAAGAAATG GACAGCATAG
  ACTTTTAGTT TGTAAATACT AAGGGATTAC GTTGTTTTAG TAATAACCGC TTCTTCCTTT
  AGGAAGTAGA GGTTTCTTTG GTGTCGGGGC ACATTTTTTT TTCTCCCAGT TAGATTTTCA
  TGAATAAACT ATCCTGGCAT CCAGAACTCA TTAATATTTT AAAGAGTATT CTCAGAGTTC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45123540	mCV23519244	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					G		A
ss49735463	NES13055364	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	A	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31406756					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49735463	NES13055364	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165467592 () rs orientation: forward

Symbol	Name	Function Class
Cpgi953	CpG island 953	1799 bp proximal
n-TPagg2	nuclear encoded tRNA proline 2 (anticodon AGG)	1611 bp upstream
Rr396497	regulatory region 396497	1355 bp upstream
Rr422408	regulatory region 422408	1540 bp proximal
Rr422409	regulatory region 422409	1634 bp proximal