rs31406961 SNP Detail

Summary

• ID
  rs31406961
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:72972641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTG GAATCTACCT GATAGGATCC
  Y
  CAAAGAATGA CTGATCCACT CTGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss45530895	mCV24617948	ABI	CRAMUS_MOUSE	f	SNP	T	C		T		T
ss50986104	NES13919805	PERLEGEN	MM_PANEL2	f	SNP		C	T		C		C	C	C
ss135306251	ENSMUSSNP2958951	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C				T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs31406961					SNP	T	C	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50986104	NES13919805	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:72972641 () rs orientation: forward

Symbol	Name	Function Class
Gm20754	predicted gene, 20754	1043 bp upstream
Gm38353	predicted gene, 38353	658 bp upstream
Rr578299	regulatory region 578299	573 bp proximal
Rr578300	regulatory region 578300	966 bp proximal
Rr578301	regulatory region 578301	1054 bp proximal
Tssr29555	transcription start site region 29555	988 bp upstream
Tssr29556	transcription start site region 29556	1024 bp upstream
Tssr29557	transcription start site region 29557	1037 bp upstream