rs31407616 SNP Detail

Summary

• ID
  rs31407616
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152552826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTTATAA AATAAAGGCT
  AGTGATTGGG CAGAGAAAGA GGGGAAGGTG GAGCTTAAGG TTTTGGGAGA AAAAGAGGAG
  GGGACCACAG AAGAGGAGGA GGAGGAGGAG GAAGGAAAGA GGAGCAGAAG CACCTGGCCC
  GGAGAAACTG TAAGTTCTAA GGGGTCTCTT ATATGGGGAA GACCATAGTG TCATGGTAGA
  W
  CTGCCCAATC TAGGCGCACA GCACATGTAT TCATATTAAC TGAGTTGTGT TTTCATTGCC
  TGGGCTTATT TGGATTAGAG ATTTACTGCA ACAGACATTA TTATCCCATA ATTCCGTAAC
  TCATGACAAT CCGGAAGTAA GAAAGAGGCA TTGTTTTGCT AATTCGCATA ACAAGTAATA
  AGGTCAAGTT ATCTCTTCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45029892	mCV24918175	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31407616					SNP	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152552826 () rs orientation: forward

Symbol	Name	Function Class
Rgl1	ral guanine nucleotide dissociation stimulator,-like 1	Intron
Rr420515	regulatory region 420515	1574 bp distal
Rr420516	regulatory region 420516	461 bp proximal
Rr420517	regulatory region 420517	1564 bp proximal