rs31409580 SNP Detail

Summary

• ID
  rs31409580
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:72380329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTTCATAT CTGAATGAAA TTGATAAAAA TTCCCTGTCT
  TAGCTTATCT ACTCTCCAGA TATCTCCTTC ATCAGGTACA CAGAGAACAT ACAGGTGTGC
  Y
  CATCTCACTA TGGCCATACT GAAGCCAGCA CCTCTGTCAG TCAATCACCC ATCATGGGCT
  CAGGTCTTAG AGGCTATTGC CTTGGCCTCA AGACTGAAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39365200	mCV23952179	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss48048893	NES12090073	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	T	C	C	C	C	C	C	C
ss148101123	ENSMUSSNP7200564	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31409580					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48048893	NES12090073	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:72380329 () rs orientation: forward

Symbol	Name	Function Class
A930009L07Rik	RIKEN cDNA A930009L07 gene	within coordinates
Kcnk9	potassium channel, subfamily K, member 9	within coordinates