rs31410410 SNP Detail

Summary

• ID
  rs31410410
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165507209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTCTGGA CTCTGGGGGT
  ACTGCATGCA CAGGGTGCAC AGATAAACAA GCAAAACACT CATACACATA GGAAAAAAAA
  TAAATCATTT TTAAAAAGAA ATCGAATGAG GGGGTGTGTG CAGACTATCT GTCAGCCTGA
  GTGTTCTATA AATGCAAAGG TGTTTGGAAG CTATCCCGAA AAGGTGCAAG CTGCACAGGA
  K
  GTTAAGGGGA GACTCTTGAC CTGGATCCTA CCACCCAAGG AGAGACTGCA AAAACCAAGG
  CAGGGGAGCA GACGTCACAG TGCTGCCCTC TAGAGAGAGC GCTGGACGTC CAGGGAAGGG
  TGAGGACCTG ACTGAGACTA CTGGAAAGGA CTTTGTAATA CTGGGCATGT TTGGAGCAGG
  GTCATAGAGA GTTCAGGGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49735308	NES13054187	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31410410					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49735308	NES13054187	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165507209 () rs orientation: forward

Symbol	Name	Function Class
Rcsd1	RCSD domain containing 1	within coordinates
Rr13801	regulatory region 13801	within coordinates
Rr13802	regulatory region 13802	1392 bp proximal
Tssr14776	transcription start site region 14776	797 bp upstream
Tssr14777	transcription start site region 14777	700 bp upstream