rs31410497 SNP Detail

Summary

• ID
  rs31410497
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165429602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAACGCTC TGAGGTACTG
  CAGCTGATGA AGTGACGATT TGAAGAACAA ATGTAAAAAC AAAAAAATTA CAATAAATGG
  AAACAAAAAT ATAACGATGC AAGTGATGGC AACAGATGCA CAAAAGCAAA AAAAAAAAAA
  AAAAAAAAAA AACGGCAGAA AACAGAACCA TAGGTCTGCA GACAACCAAC AGCTGACAAT
  S
  TCCTCCCACT TTGGAAATCC CTGCATCCTT CTCAACCAAT CAGCATGCAG CTGAGGGGAG
  GGGCGACCCT GCGATTGTGT CTGTGTGGGG AGACACTATC TTTTCTCGGG CCATCCACCC
  TGCTTCTGGA TAAATGTTCA GAGGAATAAC CACTTGCTTA ATGGCCAAGA CCTTTGGTCA
  CCATCACAGG AAAGCATCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss49735507	NES13056076	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs31410497					SNP	C	C	C	C	C	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49735507	NES13056076	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165429602 () rs orientation: forward

Symbol	Name	Function Class
Mpzl1	myelin protein zero-like 1	within coordinates
Rr422396	regulatory region 422396	1138 bp proximal
Tssr14771	transcription start site region 14771	73 bp upstream