rs31410499 SNP Detail

Summary

• ID
  rs31410499
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165429151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGAACTA ACTATTGCCC
  CAGCCCTTCC CTGATAAATT CTTACAGCGT TTCTTTTAGA TTATAGTTTA CTAAACTTTA
  TTTCCTTGGG TAACTGAGGA ACGCAATATA GCTGACAACG TTACTTGCTA CTTGCACTTA
  GAAGTGCCAC GGTTTTTAGT AAATGTTAGT GGTGGTTTTG TGGAAAACTT GACTGAAATC
  Y
  ATCCGTTCTT TGTAACACAC TTTTTTGGAG TCTTAGAGCG CCCTTTTAAT TCCTCCATCT
  TCCTCCTTTT CTCTTATCTG ATGGCTCTAT CACGGTGCAA GATTCACCCT CATTCCCAAG
  AAGTTATAGT GTACCAAACC TTAGGGCAGA GTGCCATCAG CTGTTACCTG GTGAGATCCG
  GCGGAAGGCG GACTCTTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49735509	NES13056074	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31410499					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49735509	NES13056074	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165429151 () rs orientation: forward

Symbol	Name	Function Class
Mpzl1	myelin protein zero-like 1	within coordinates
Rr422396	regulatory region 422396	1589 bp proximal
Tssr14771	transcription start site region 14771	375 bp downstream