rs31410963 SNP Detail

Summary

• ID
  rs31410963
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128534492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAT AGCTAGCTTT GCACTTGTGC
  Y
  TTTGTAAATG GAGCCAGGGT CATCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45030538	mCV23204150	ABI	CRAMUS_MOUSE	f	SNP		T						C	T
ss60796459	NES16465433	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	T	T		C	T	T	C		T
ss145462755	ENSMUSSNP853915	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss319965304	CHEV_1_130503332	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31410963					SNP	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60796459	NES16465433	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128534492 () rs orientation: forward

Symbol	Name	Function Class
Rr366987	regulatory region 366987	696 bp downstream
Rr396265	regulatory region 396265	441 bp downstream
Rr417790	regulatory region 417790	446 bp distal
Rr417791	regulatory region 417791	1215 bp proximal
Tssr13482	transcription start site region 13482	1219 bp downstream