rs31411296 SNP Detail

Summary

• ID
  rs31411296
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:72382068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGCATAAA GTACTCTGCA TATAGGCATC AGGAGTGTCA
  CGTTTGTGAC CCAAAAGAGC CAACAATCTC TTTGCAGAGC AAAAAAAAAA CATTCAAGAA
  K
  AGTGATTGCT TCTATTCTCT GGACAGACTT GAGAGCCCTG TGCAGGGCAT TCCACACAAC
  AACATCTCAA ACAAGTGAAC TGAGAAAGAC CTCGAAGTT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48048909	NES12090085	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	G	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31411296					SNP	T	T	T	T	T	T	G	G	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48048909	NES12090085	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:72382068 () rs orientation: forward

Symbol	Name	Function Class
A930009L07Rik	RIKEN cDNA A930009L07 gene	961 bp upstream
Cpgi7151	CpG island 7151	1907 bp proximal
Kcnk9	potassium channel, subfamily K, member 9	within coordinates