rs31411686 SNP Detail

Summary

• ID
  rs31411686
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172034586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCC AGGACCCCTG GAAGGCAGAT
  S
  AATTTGGATT GGGGGATTTG GAAGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45030352	mCV23614954	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss120007348	PARCsnp_1.17752	PARC_SEQ	INBRED	f	SNP			C	G
ss120010247	PARCsnp_1.07391	PARC_SEQ	INBRED	f	SNP			C	G
ss146183827	ENSMUSSNP693827	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320123200	CHEV_1_174137150	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31411686					SNP	G	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172034586 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1038	CpG island 1038	66 bp distal
Gm17224	predicted gene 17224	8 bp upstream
Pea15a	proliferation and apoptosis adaptor protein 15A	288 bp upstream
Rr396578	regulatory region 396578	221 bp upstream
Rr423484	regulatory region 423484	1543 bp distal
Rr423485	regulatory region 423485	226 bp distal
Rr423486	regulatory region 423486	within coordinates
Tssr294	transcription start site region 294	386 bp upstream
Tssr295	transcription start site region 295	336 bp upstream
Tssr296	transcription start site region 296	260 bp upstream
Tssr297	transcription start site region 297	226 bp upstream
Tssr15164	transcription start site region 15164	354 bp upstream
Tssr15165	transcription start site region 15165	264 bp upstream
Tssr15166	transcription start site region 15166	233 bp upstream
Tssr15167	transcription start site region 15167	682 bp downstream