rs31412657 SNP Detail

Summary

• ID
  rs31412657
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:137353826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cgtgcgtgc gtgcgtgtgt gtgtatgctt
  acagggaaag cactcatcca gtaagacatc tccccagccc TCCCTGAGTA GTTCTGATTC
  CAGTATGATG CTTTTGAGAA GCATACAGTT AATAACATGt gtgtaataca gactgccttc
  R
  aacttgtgaa cctcatactt cctcctcttg aacatatcct actggccagc gctaccatga
  ctggcAAGat tccatctatg aagcccctgt aggatatgta gcaacgaagt tcttttctcc
  atttggagct gtctcctcag gctgctggtt                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45030761	mCV24512072	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss145568646	ENSMUSSNP3207839	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss319998516	CHEV_1_139322665	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31412657					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:137353826 () rs orientation: forward

Symbol	Name	Function Class
Cpgi822	CpG island 822	61 bp distal
Gm70880	predicted gene, 70880	within coordinates
Rr19496	regulatory region 19496	1575 bp proximal