rs31412836 SNP Detail

Summary

• ID
  rs31412836
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36052211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGGTTTT AAAAACAAAA
  CAAAAAAATT CTTGTTGGAC TGTAATAGTA AAAACTGCCT GGCACACACA ATTAGCATTG
  TCATGGAAGA TAATAGACCA TATTTTGACA TTTTCTGTTC TATTTTATTA AATCAAACAA
  CAGTTTGAAA ATATAATTGA ATGCACCCCT TGGGTAAGGC AGTATTGACA TTAAGCCAGA
  S
  AAATCAAAGG AAGGACGTTG AACAGAGATA ATAGAAATAA GAAATGTTGG CAGGGCTAGA
  GAGATGGCTC AGCGGTTAAG AGCACTGACT GCTCTTCCAG AGGTCCTGAG TTCAATTCAA
  ACCACATGGT GGCTCACAAC CATCTGTAAT GGGATCTGAT GGACGCTTTT AGTGTGTGTC
  CGAAGACAGC TGTAGTGTAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss45531299	mCV24305372	ABI	CRAMUS_MOUSE	f	SNP		C	G			G	G
ss51452932	NES14433143	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C			G	C	G	G	G
ss134776668	ENSMUSSNP4968106	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31412836					SNP	C	C	G	C	C	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51452932	NES14433143	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36052211 () rs orientation: forward

Symbol	Name	Function Class
Mccc1	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	within coordinates
Mccc1os	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), opposite strand	1851 bp upstream
Rr575296	regulatory region 575296	1681 bp proximal
Rr575297	regulatory region 575297	1883 bp proximal