rs31413559 SNP Detail

Summary

• ID
  rs31413559
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121614327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGCCCAAT ATCTGGCCCC CACGCTCTCC ACCACCACCC
  ACCAGAATGG AAAATTGCAT AATTGAAAAC AGAGTCTCAT ACATTCCAAT CTGGCCTTTA
  M
  CTCACTATGT AGCTGGAGAG GACCTTGACC CTCGGATCCT CCTACGTCCA AGTACTGGAA
  TTGCAGGCTT GGACCACCAT GCTTAGTTTA TGTGTGCAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45531224	mCV22520172	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	A
ss135729762	ENSMUSSNP2987083	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C	A
ss320906079	CHEV_3_121523596	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31413559					SNP	C	C	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121614327 () rs orientation: forward

Symbol	Name	Function Class
Rr584177	regulatory region 584177	within coordinates
Rr584178	regulatory region 584178	1057 bp proximal