rs31414897 SNP Detail

Summary

• ID
  rs31414897
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:72540710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACCACAC AGCTTTCCCC
  TGGAGCGTGT CGCTGCATTC TGAGCCGTGC CGCAGATGTT AGAGCTACAG CTCCCCTCTT
  CTGCTTCAGG GCTGCATTGT GTTCCCTAAC ACAACAACAG GACTTCCTGA GACATCAGGG
  GGTACAGGAT GACTCTTTGC CATGGATGGG TTTTGCTTAC AATTATCTGG TGGGTCAAGC
  R
  TGTGTTCTGG GTTACATCCC AGCATGTGTC TATTCAATAA GTATCATCAG GGGGGATACC
  ATGAGGATGG TCATTTCTGG AGCTAAGCGA CATGCCCTGT GGCCTATGCT TTGATAAATC
  TCACAGTCCC TGAGGCAGAA CCAGCAGGCT CCTTCCAAAG AGCAAAAACA GGCCAGGGGG
  TGAGGAGGCT TTTCTGGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss48049859	NES12098788	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs31414897					SNP	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48049859	NES12098788	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:72540710 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi7154	CpG island 7154			103 bp distal
Trappc9	trafficking protein particle complex 9			Intron
				Noncoding-Transcript-Variant