rs31415113 SNP Detail

Summary

• ID
  rs31415113
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165322818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTACAAATGT AATGAATGTG GCAAATCCCT TTCCACATCC
  TCAAGTCTTA AAACATGTCA GAGAATTCCC ACAGGGAATA AGCCTTACAA ATATAATTAA
  Y
  GTGAAAAGTC CTTTACCTGT AATGGAAGTT GCAGAACTCA TCAAAGAATT CATACAGAAG
  AGAGATCTTA CAAATGCAGT GAATGTGACA AACACTTTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49736072	NES13057960	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	C	T	T	C		T	T	C	T
ss146001320	ENSMUSSNP3620506	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31415113					SNP	T	T	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49736072	NES13057960	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165322818 () rs orientation: forward

Symbol	Name	Function Class
Adcy10	adenylate cyclase 10	within coordinates
Gm18186	predicted gene, 18186	248 bp downstream
Gm38325	predicted gene, 38325	82 bp upstream
Gm70586	predicted gene, 70586	within coordinates