rs31415330 SNP Detail

Summary

• ID
  rs31415330
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:162740608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAAGTAC TGTTCCACAG
  TCTCCGGTGG TAAGGCTGGC CATCACCTTA ACCTAGCACT GCTGTGGGAG CTCAACCCTC
  TTGCCTGCAT TTGTAAGTGC TTGGTCATCT TATAAACATC TAATTTTATG AATCTACTAA
  ATGTATAGCT CTACCACTTA GAATATCGGG TTCTGTCACG TGCGGGCCAT TTTTAAGTGG
  Y
  GTGGTGGCTA GCTGCAGAGA TGAGCTGGGC AGGAAATCGA GGGAAGCAGC TGCATGGGCT
  GGGGGTGTAG CTCACTTGGC AGAGTGGTTT GCCTAGCACG CACGAACCGA TCAACTTGCA
  AAGTGCCATG GTCGCCGAAA CTCTGTCACC CCGACACTTC GAAGGCAGAG GCAGGAGGAT
  CAGAAGTTTA AGAGTCGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47050660	NES11144492	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31415330					SNP	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47050660	NES11144492	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:162740608 () rs orientation: forward

Symbol	Name	Function Class
Cpgi23043	CpG island 23043	41 bp proximal
Gm38561	predicted gene, 38561	381 bp upstream
Gm56686	predicted gene, 56686	657 bp upstream
Rr8437	regulatory region 8437	within coordinates
Tssr162604	transcription start site region 162604	627 bp upstream
Tssr162605	transcription start site region 162605	1132 bp upstream
Tssr164522	transcription start site region 164522	474 bp downstream
Tssr164523	transcription start site region 164523	951 bp downstream
Tssr164524	transcription start site region 164524	978 bp downstream
Tssr164525	transcription start site region 164525	990 bp downstream
Tssr164526	transcription start site region 164526	1022 bp downstream
Zrsr2	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	within coordinates