rs31415333 SNP Detail

Summary

• ID
  rs31415333
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:162741371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCCCTGC GCCCCGCCCC
  CCATCTCCTC GGGCGGCCCG GGACAGCCCC GGAGATAGTC GTCCCCGCCC CAGTCGCCTC
  GCCTCGTCAT TTCCTATACC TCAGTTTCTG CGGCCCCGCC GTAGCGTCCG CCGTAGCCCC
  CGCCGTTTCC ATACTGCTGT CGCTGTGTTC TCCCACGGCA AGGTCTCAGC GGAAGCAGCC
  R
  CCCAGGTCCT CGGTCGCCCA CTCCGCGCGG CCACCAACCG GTACCTGCCC AAGACGGAAG
  GAGACGGCTT TCTTCCCGCA GCTGGTCAGC CAGGCGCCGC GGCCTGAGAA AACAGACCCT
  CAAAGAGGCC GCCGCAGCCA CCGCGGCAGA CCTGAGTTTT CCTCCCTCGG CCAGTCAGCC
  AGGCATCGCG GGCTGAGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47050663	NES11144431	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31415333					SNP	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47050663	NES11144431	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:162741371 () rs orientation: forward

Symbol	Name	Function Class
Cpgi23043	CpG island 23043	within coordinates
Gm38561	predicted gene, 38561	within coordinates
Gm56686	predicted gene, 56686	within coordinates
Rr8437	regulatory region 8437	within coordinates
Tssr162604	transcription start site region 162604	63 bp downstream
Tssr162605	transcription start site region 162605	369 bp upstream
Tssr164522	transcription start site region 164522	243 bp upstream
Tssr164523	transcription start site region 164523	188 bp downstream
Tssr164524	transcription start site region 164524	215 bp downstream
Tssr164525	transcription start site region 164525	227 bp downstream
Tssr164526	transcription start site region 164526	259 bp downstream
Zrsr2	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	within coordinates