rs31415805 SNP Detail

Summary

• ID
  rs31415805
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:72541875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCCCTCA GAGAGACAGG
  AGCTCCCAAG GGCTTTTTTG CAGTTCCGTA TCATCGTTGT CCTAGAATAA ACTGAGTCAC
  CCTTCACCAC AAGAAAGAGC GATGCACAAC ACGTCTGACA AGCCTGGGTT GTGTAAGTCA
  CTGGTTTTAG GAGGATTCTT TGCTATGTCA GTGAACTGGC TGACCCAATC ACTTACTGGT
  Y
  TGCAAGGGCA CACTACCATC TACACTTTCA CTAGTCACGG CATGGTGACT CTTTTGACTC
  TGTTTACCCA ACTGTCCATC TATCTGCTCA GCTGTACATC AGTCCAGCCA GCCGGCTGGA
  CAGCTATGGA CTCTCTCTTC CCACCTATCT TTCTTATGAA GGCTTCATCC CATGCCCAGA
  GCCATCCCAC AAAACTGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss48049867	NES12098732	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs31415805					SNP	T	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48049867	NES12098732	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:72541875 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Trappc9	trafficking protein particle complex 9			Intron
				Noncoding-Transcript-Variant