rs31416222 SNP Detail

Summary

• ID
  rs31416222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69027135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATCAACTGT GAATTTTCTT TTTTTCTTTC ATTCTTTCTT
  CTCCTTAATT TTATTAAAAA AAAAATTCTT AGGTTGGGAG GAAATCTTTT CATTGTATAA
  Y
  AAACTGTGTC AGCATTTGGA AGATCTGAGT AACTTCAGTC TGGTTTTGTC AGTGGGATGT
  TTTCCAAATA ACTCAATACA TGTAACAAAA CCATGAAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45531338	mCV24616064	ABI	CRAMUS_MOUSE	f	SNP		T	C	T
ss135265098	ENSMUSSNP4459699	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss320791938	CHEV_3_68923724	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31416222					SNP	C	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69027135 () rs orientation: forward

Symbol	Name	Function Class
Gm37558	predicted gene, 37558	within coordinates
Kpna4	karyopherin subunit alpha 4	Intron
Rr578128	regulatory region 578128	553 bp distal