rs31416320 SNP Detail

Summary

• ID
  rs31416320
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180769216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTC AGAGAAGCAG CAAAACTGTG
  Y
  CTTAGGGAAT GAGGATTTGC CGGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45030593	mCV25327872	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss146388053	ENSMUSSNP4365754	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss320160465	CHEV_1_182871782	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31416320					SNP	C	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180769216 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1127	CpG island 1127	160 bp proximal
Cpgi1128	CpG island 1128	1730 bp proximal
Rr424644	regulatory region 424644	600 bp distal
Rr424645	regulatory region 424645	247 bp distal
Rr424646	regulatory region 424646	318 bp proximal
Rr424647	regulatory region 424647	819 bp proximal
Tmem63a	transmembrane protein 63a	693 bp upstream
Tssr10503	transcription start site region 10503	674 bp upstream
Tssr10504	transcription start site region 10504	708 bp upstream
Tssr10505	transcription start site region 10505	783 bp upstream
Tssr10506	transcription start site region 10506	801 bp upstream
Tssr10507	transcription start site region 10507	849 bp upstream