rs31416325 SNP Detail

Summary

• ID
  rs31416325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:61316554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACAGGATCT GGACAGATGT GAAAAACACA TAGACAGTCA
  GTTGGAGCAT TATTCATTTG ACACAACAAA TTACCACAAA CAGTAGCTGC ACTTCTGATG
  Y
  ATGGTTGTGT ATATAATATA TATTGTTTGG GTTTTATTTA TTATTTCTAC ATTTTAAAAA
  CCATTATGGA GGGACACTGA AGAGGGGCTC ACTTTGACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45531251	mCV24499796	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs31416325					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:61316554 () rs orientation: forward

Symbol	Name	Function Class
Gm40061	predicted gene, 40061	within coordinates
Rr72571	regulatory region 72571	1354 bp distal
Rr81199	regulatory region 81199	within coordinates
Tssr888	transcription start site region 888	785 bp upstream