rs31416424 SNP Detail

Summary

• ID
  rs31416424
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99508583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCG ATTATTCTCT CCGAAGTAAC
  Y
  ATAATCTCAG CTGTTAGTAA TGTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46029842	mCV24185790	ABI	CRAMUS_MOUSE	f	SNP		C	C				C		T
ss51920255	NES14942859	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C		T	T	C	C	T	C	C	C	C
ss145517554	ENSMUSSNP4370522	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31416424					SNP	C	C	C	C	C	C	C	T	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51920255	NES14942859	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99508583 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19472	CpG island 19472	47 bp distal
Rr400465	regulatory region 400465	247 bp downstream
Rr652012	regulatory region 652012	250 bp distal
Spcs2	signal peptidase complex subunit 2 homolog (S. cerevisiae)	within coordinates
Tssr68077	transcription start site region 68077	256 bp downstream
Tssr68078	transcription start site region 68078	236 bp downstream
Tssr73711	transcription start site region 73711	1073 bp upstream
Tssr73712	transcription start site region 73712	470 bp upstream
Tssr73713	transcription start site region 73713	455 bp upstream
Tssr73714	transcription start site region 73714	369 bp upstream
Xrra1	X-ray radiation resistance associated 1	within coordinates