rs31416640 SNP Detail

Summary

• ID
  rs31416640
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9726994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTACCCTT CCCCTCCCTT ATATAGCCTA ACAACCATTG
  ACTAGAGAAC AGTGCTGTCC TCAGTGACCG GAGTCTTTTC ATCAATTAAA AATCAAGGCG
  K
  TCCTTCATAA ACATGACGAT AGGCCAGTCT GAACTAGACA GTTCCTCAGA TGATTCCAAG
  TTTGGACAAA CTGAACCAAA ACATACTAGA AAGAACAAC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46524673	mCV24735813	ABI	CRAMUS_MOUSE	f	SNP	T	G	G	T
ss134087552	ENSMUSSNP459132	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31416640					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9726994 () rs orientation: forward

Symbol	Name	Function Class
Gm62614	predicted gene, 62614	within coordinates
Tssr5590	transcription start site region 5590	1344 bp upstream
Tssr160530	transcription start site region 160530	1375 bp upstream