rs31416739 SNP Detail

Summary

• ID
  rs31416739
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165319790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TATATGTTTG ACAACTGTGA ATGGTGCAGC AGTGATATGT GTTAGTGTGG GATGCAAATA
  TCCCTTCAAC ATAGTAATTT TATTTTTCTT TTGATGGGCG TGCAGGGTAA AAATGGCAGT
  TGTATTTGTA ACTTTTGAGG AAGCTCCATA CTGTATCCTG TGCTACTGAT TCAGTCCATA
  TCAAAAATCC CCCCACGATG CCATGGTGAG CTCTCTGAAC TGACAGTACT ACATTGATCA
  ACAGTCATTA TTGTGATTGT TAACCTGCAG AGAGTCGTTA GCCCCATAAT TTGGTCATTC
  S
  TATTTAACTC TTAAGAATAT GAGACACATA GTGATAGATA TGCCTTGTTG AAGTCAAGGC
  ATGCTTTACC TGCAGCATTC TCTTGATAGG AAATGAGCCA AGCACAGTGT CATGTGCCTG
  TAGCCCTAGC TGCTGGGGAA GCTTAGACTG GAGTGGGGCT TGAGCCCTAG GAACCTGGTA
  AAATAGGGAT ATCTCGAAAT AATAGTAAAA TGTCTTAAAA GGAAGAACGA ACTTATCTGA
  ATGCACCCAA AACCCCTCCC TTTCTTTTGC TTGATGTGGA CTCATGAATT AGCCCTGGCT
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45163649	mCV23457069	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		G
ss49736089	NES13057942	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	G	C	C	G	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31416739					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49736089	NES13057942	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165319790 () rs orientation: forward

Symbol	Name	Function Class
Adcy10	adenylate cyclase 10	within coordinates
Gm18186	predicted gene, 18186	1201 bp upstream
Gm38325	predicted gene, 38325	1570 bp downstream
Gm70586	predicted gene, 70586	747 bp downstream