rs31417101 SNP Detail

Summary

• ID
  rs31417101
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88499060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGAGACTGG AAGTTAATCT CCCCCAGAGC ACAGCTGGAG
  CATGGAGGGT AACACTGACC ACACAGCGGG GATCCCAGCC CCTAGGTGGC CACTCAGCGT
  Y
  GGCCTCTGTC TTGGAGCTTG CATCCTCATC CAGATTGTTC AATGTGGATT TCCACGGCCT
  CCTCCCCACT GAGAGGGCAC AAGCATCTCT CCTGTATTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45531351	mCV23479701	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss135470488	ENSMUSSNP6845913	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320835709	CHEV_3_88395675	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31417101					SNP	T	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88499060 () rs orientation: forward

Symbol	Name	Function Class
Gm52660	predicted gene, 52660	261 bp upstream
Rr397772	regulatory region 397772	203 bp upstream
Rr397773	regulatory region 397773	1586 bp upstream
Rr579834	regulatory region 579834	201 bp distal
Rr579835	regulatory region 579835	342 bp proximal
Tssr29977	transcription start site region 29977	1337 bp upstream
Tssr29978	transcription start site region 29978	1365 bp upstream
Tssr29979	transcription start site region 29979	1416 bp upstream