rs31417402 SNP Detail

Summary

• ID
  rs31417402
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170786850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTA TAGGCTTTCT AAAAACAATA
  W
  CAAATATATA TACCCTGAAT GTACA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45030608	mCV24427277	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
ss146148928	ENSMUSSNP1882305	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
ss320114988	CHEV_1_172889412	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31417402					SNP	A	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170786850 () rs orientation: forward

Symbol	Name	Function Class
Fcgr2b	Fc receptor, IgG, low affinity IIb	within coordinates
Gm70986	predicted gene, 70986	965 bp upstream
Rr20517	regulatory region 20517	250 bp distal
Rr20518	regulatory region 20518	151 bp proximal
Rr20519	regulatory region 20519	550 bp proximal
Tssr284	transcription start site region 284	613 bp downstream
Tssr14949	transcription start site region 14949	364 bp upstream
Tssr14950	transcription start site region 14950	458 bp downstream
Tssr14951	transcription start site region 14951	536 bp downstream
Tssr14952	transcription start site region 14952	793 bp downstream
Tssr14953	transcription start site region 14953	808 bp downstream
Tssr14954	transcription start site region 14954	1575 bp downstream
Tssr14955	transcription start site region 14955	1804 bp downstream