rs31417849 SNP Detail

Summary

• ID
  rs31417849
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4665996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCCCACA GCTATTGGGA
  TTTTTCCACT GCAGACCCCA CCAAAAGGGT TACTCTATTG TCTTCAAGGG AAACAACTGA
  GCCAATGAGG CAGCTGAAGC TGTGGCTCTT AGGGGCCTGG ACTCATCTCA CCCTTTTCAG
  GACATCCTTA CACTGCAATT CACATTCCTA CCTTCACCCC CTGACACTTG CCAAAATCTG
  Y
  CCTATCTTCA CCAACTCTTT CATCCTAACA GTCAAACATT GTCTTCTTTT GTCAGGACCC
  ACCTACAGAC TACTCCTGAG GACTGAAGTT TCTTAAAATC TATCACTGCC CCTTGCAAAA
  TCTGTCAGAT GTCAGACTCC AACTCGAGGA ATCGTAGCAC CCCTTTTCTT ACCCATCAGG
  CTAGAGAGTC CCTTCCTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45031275	mCV24644184	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss51224269	NES14298370	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		T		C	C	C	C	C	T
ss148473246	ENSMUSSNP1543727	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31417849					SNP	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51224269	NES14298370	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4665996 () rs orientation: forward

Symbol	Name	Function Class
Gm37323	predicted gene, 37323	within coordinates
Gm39586	predicted gene, 39586	within coordinates