rs31417999 SNP Detail

Summary

• ID
  rs31417999
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45026916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTGTGTG GCAGGGCACC
  CCTTGTGACT GCCCTATCCC AAGAAACCAG ATGCCCAATC TTACCTCTCA TCATATCGGG
  AAGTGTCATC TCGGCCCGAA TGCCTGATAT TCACATCTGC CCCACCTCTT CTGGTACCAC
  CAAGGCCACC TCCTACGGGC AAAGGAACAC AAGGTCAGTG GAAACAGTAC AAAGGGGAAA
  W
  TCTTAAAGGG GCCTATGCAG CTGACAAAAA AACAAGCACC CCTACTAACT GCCATGGGGC
  ATAATCTCCT GCCAATCACT TCCATGTCCA CTGGTTGTAG GATAGCCATG TTATCCACAA
  GACTTTTACA AAGTGCTAGA GCTGAGGACA CCCCAACAAG AACCTTCTTG ACTCCCAAGC
  TGTCCATCTT ACCTGAGGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss46029943	mCV22694967	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	A
ss149134206	ENSMUSSNP1042261	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs31417999					SNP	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45026916 () rs orientation: forward

Symbol	Name	Function Class
Snrnp70	small nuclear ribonucleoprotein 70 (U1)	within coordinates
Tssr66520	transcription start site region 66520	295 bp downstream