rs3141838 SNP Detail

Summary

• ID
  rs3141838
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83468776 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGAAT TATTTGATAA CTTTTCCTAG
  M
  CAATCCTAGC TGACATTGTA GTTAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37141427	NES08462373	PERLEGEN	MM_PANEL2	r	SNP	T			G	T		G	G	G		G	G	T	G
ss38743493	mCV24634364	ABI	CRAMUS_MOUSE	r	SNP		T	T			G
ss323767489	CHEV_11_83391452	CHEVERUD	SCREENING_POP	r	SNP										T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs3141838					SNP	A	A	A	C	A	C	C	C	C	A	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37141427	NES08462373	PERLEGEN	MM_PANEL	r	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83468776 () rs orientation: reverse

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	within coordinates
Rr452990	regulatory region 452990	676 bp proximal
Rr452991	regulatory region 452991	1055 bp proximal
Rr452992	regulatory region 452992	1269 bp proximal
Tssr109695	transcription start site region 109695	1992 bp upstream
Tssr109696	transcription start site region 109696	996 bp upstream
Tssr109697	transcription start site region 109697	803 bp upstream
Tssr109698	transcription start site region 109698	470 bp downstream
Tssr109699	transcription start site region 109699	517 bp downstream
Tssr109700	transcription start site region 109700	546 bp downstream
Tssr109701	transcription start site region 109701	579 bp downstream
Tssr109702	transcription start site region 109702	636 bp downstream
Tssr109703	transcription start site region 109703	646 bp downstream
Tssr109704	transcription start site region 109704	670 bp downstream