rs3141839 SNP Detail

Summary

• ID
  rs3141839
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:83465615 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTCTG ATAGTCACTT ATGGCAACCC
  R
  GGTACATTCA ACTAGGATGA AATAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37141435	NES08462406	PERLEGEN	MM_PANEL2	r	SNP	C		C	C	T	C	C	C	T	T		T	C	C		C
ss132470748	ENSMUSSNP1826438	ENSEMBL	ENSEMBL_Sanger	r	SNP		C	C					C
ss323767485	CHEV_11_83388291	CHEVERUD	SCREENING_POP	r	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3141839					SNP	G	G	G	G	A	G	G	G	A	A	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37141435	NES08462406	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83465615 () rs orientation: reverse

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	mRNA-UTR
Tssr103714	transcription start site region 103714	109 bp downstream
Tssr103715	transcription start site region 103715	59 bp downstream
Tssr103716	transcription start site region 103716	561 bp upstream
Tssr109677	transcription start site region 109677	1105 bp upstream
Tssr109678	transcription start site region 109678	724 bp upstream
Tssr109679	transcription start site region 109679	440 bp upstream
Tssr109680	transcription start site region 109680	189 bp upstream
Tssr109681	transcription start site region 109681	70 bp upstream
Tssr109682	transcription start site region 109682	191 bp downstream
Tssr109683	transcription start site region 109683	242 bp downstream
Tssr109684	transcription start site region 109684	268 bp downstream
Tssr109685	transcription start site region 109685	313 bp downstream
Tssr109686	transcription start site region 109686	376 bp downstream
Tssr109687	transcription start site region 109687	425 bp downstream
Tssr109688	transcription start site region 109688	472 bp downstream
Tssr109689	transcription start site region 109689	515 bp downstream
Tssr109690	transcription start site region 109690	528 bp downstream
Tssr109691	transcription start site region 109691	538 bp downstream
Tssr109692	transcription start site region 109692	569 bp downstream
Tssr109693	transcription start site region 109693	680 bp downstream
Tssr109694	transcription start site region 109694	1074 bp downstream
Tssr109695	transcription start site region 109695	1124 bp downstream