rs3141840 SNP Detail

Summary

• ID
  rs3141840
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83464332 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCTGT AGCAAAAACT TCAAGTACTC
  W
  GCTGAAAAGA AGTACTGAGA GAAAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38812449	mCV24634353	ABI	CRAMUS_MOUSE	r	SNP	A	T	A
ss132470736	ENSMUSSNP4136605	ENSEMBL	ENSEMBL_Sanger	r	SNP	A		A
ss323767483	CHEV_11_83387008	CHEVERUD	SCREENING_POP	r	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3141840					SNP	T	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83464332 () rs orientation: reverse

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	within coordinates
Rr452989	regulatory region 452989	855 bp distal
Tssr103714	transcription start site region 103714	1141 bp upstream
Tssr103715	transcription start site region 103715	1182 bp upstream
Tssr103716	transcription start site region 103716	1844 bp upstream
Tssr109677	transcription start site region 109677	167 bp downstream
Tssr109678	transcription start site region 109678	543 bp downstream
Tssr109679	transcription start site region 109679	821 bp downstream
Tssr109680	transcription start site region 109680	1083 bp downstream
Tssr109681	transcription start site region 109681	1205 bp downstream
Tssr109682	transcription start site region 109682	1474 bp downstream
Tssr109683	transcription start site region 109683	1525 bp downstream
Tssr109684	transcription start site region 109684	1551 bp downstream
Tssr109685	transcription start site region 109685	1596 bp downstream
Tssr109686	transcription start site region 109686	1659 bp downstream
Tssr109687	transcription start site region 109687	1708 bp downstream
Tssr109688	transcription start site region 109688	1755 bp downstream
Tssr109689	transcription start site region 109689	1798 bp downstream
Tssr109690	transcription start site region 109690	1811 bp downstream
Tssr109691	transcription start site region 109691	1821 bp downstream
Tssr109692	transcription start site region 109692	1852 bp downstream
Tssr109693	transcription start site region 109693	1963 bp downstream