rs31418990 SNP Detail

Summary

• ID
  rs31418990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191820682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGAAACTG TCCTAATTAT GCTTGTAACG GTTACCCTTC
  TCCTTTCAGA GAGGGGATAC TACCTACTTG GTAAGTCCTA ATGGGGAGAA GGATGGAAGC
  Y
  CCCTAGCATA CCTAAACTAA ACGGACATGA CTGCTTTCCT TGTGAAATTA CAAGTGAGTC
  CTCTGCAACA CCAACTACAA CTCCAGCGTC GGACTCGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45031084	mCV25166211	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss146513853	ENSMUSSNP3890390	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T		C
ss320197031	CHEV_1_193960264	CHEVERUD	SCREENING_POP	f	SNP				T		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs31418990					SNP	C	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191820682 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1232	CpG island 1232	82 bp proximal
Gm10516	predicted gene 10516	516 bp upstream
Gm37055	predicted gene, 37055	307 bp upstream
Rcor3	REST corepressor 3	within coordinates
Tssr15823	transcription start site region 15823	1194 bp downstream
Tssr15824	transcription start site region 15824	1509 bp downstream
Tssr15825	transcription start site region 15825	1570 bp downstream
Tssr15826	transcription start site region 15826	1613 bp downstream