rs31419260 SNP Detail

Summary

• ID
  rs31419260
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:102126561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTATTTAT TTATTTATTT
  ATTTATTTTT GGCTGTATTA AAATTTAACT CCACCACTTT TTCTTTTTCA TTTTCTTTTT
  TAATGTAATG ACTGAAAGTC ACAAAGCATC ATGCTAAGAC TACGCTCGTT TTGCTATATG
  ATTCCTACAA TACACTAAGC TTCTGGTTTC TTTTTGTTGA AGGTCTCCCC CATAAATTAC
  S
  TCTTTGAGAG CCTGTGATAG GAAAAGATAT GACTGCTTGC TTAATGTTAG AACTCAGGTA
  GCTGGCAGAA TTCACACACT TAGCTCCTGA GGAATTTTAT TAGTGGGCAC AGTTAATAGT
  TTTAGGAGAT ATTTCCAAGA TTCTTGATTA CGGTAGAAAT TTTACTGTAA TGTAGCTGCC
  TATAAAGAAC AAACTAGACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39287670	mCV22290627	ABI	CRAMUS_MOUSE	f	SNP	C	C	G					G		G
ss49352246	NES12571137	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	G	G		G	G	G	G	G	G	C	C	C
ss146740373	ENSMUSSNP6483834	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31419260					SNP	C	C	G	G	G	G	G	G	G	G	G	G	G	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49352246	NES12571137	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:102126561 () rs orientation: forward

Symbol	Name	Function Class
Gm52170	predicted gene, 52170	564 bp downstream
Lmo7	LIM domain only 7	within coordinates
Tssr126932	transcription start site region 126932	1645 bp downstream