rs31419351 SNP Detail

Summary

• ID
  rs31419351
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:75563856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGCCGGAGG AACTACGATT TCCACCACAG CAATGACTCC
  ATCTACCATG AGGCCGCGGG GCGGATTTTA CTCAGGCCAG TGAGGGAAGA CTCGGCCTCC
  M
  CACGCACGAA GGCCCAACAA ACCAGGCTTT GTTGTGGGAG CAGCGTCTGG GAAAGGCCAG
  AGTTTGTCAT TCATCAAACC CAAAACGCTG CGAGCTTAC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148372288	ENSMUSSNP6895227	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss325251667	CHEV_16_75767213	CHEVERUD	SCREENING_POP	f	SNP		C	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs31419351					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:75563856 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8370	CpG island 8370	within coordinates
Hspa13	heat shock protein 70 family, member 13	within coordinates
Rr319131	regulatory region 319131	1656 bp distal
Rr325470	regulatory region 325470	within coordinates
Rr404916	regulatory region 404916	46 bp upstream
Rr404917	regulatory region 404917	944 bp upstream
Tssr141799	transcription start site region 141799	171 bp upstream
Tssr141800	transcription start site region 141800	105 bp downstream