rs31419798 SNP Detail

Summary

• ID
  rs31419798
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154931245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTGTCTCT AAAATATAAA ATCTAGGGAC TAGAGAGACA
  GCTTGGCAGT TAAGAGCACT GGGTGCTCTT CCAGAGGGCC CAGGTTCAAT TCCCAGCACC
  Y
  ACATGGTGGC TCATAGCAAT CTGTGACTCC AGCTCTAGGA GAACTGATAC CCTCTTCTGT
  TCTGCACTGC CATGTGCTGT CCAGACATAA GTGCAGGCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45031197	mCV23095476	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss145774424	ENSMUSSNP43914	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs31419798					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154931245 () rs orientation: forward

Symbol	Name	Function Class
Gm29282	predicted gene 29282	within coordinates
Gm41980	predicted gene, 41980	within coordinates
Gm51651	predicted gene, 51651	1025 bp upstream
Gm71001	predicted gene, 71001	within coordinates
Rr372279	regulatory region 372279	within coordinates
Rr420921	regulatory region 420921	1856 bp distal
Rr420922	regulatory region 420922	644 bp distal
Rr420923	regulatory region 420923	143 bp distal
Rr420924	regulatory region 420924	648 bp proximal
Tssr247	transcription start site region 247	719 bp upstream
Tssr9520	transcription start site region 9520	484 bp downstream
Tssr14327	transcription start site region 14327	738 bp upstream
Tssr14328	transcription start site region 14328	688 bp upstream
Tssr14329	transcription start site region 14329	635 bp upstream
Tssr14330	transcription start site region 14330	314 bp upstream