rs31420497 SNP Detail

Summary

• ID
  rs31420497
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:76170764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGCACAGC TAGCTCCCTA GACGGACGCA GGACCCAGGA
  ACCTGGTTTC TCTTCTGCTG CTTTGTCACT GCGAAGTCTC CAGCAGGGTC TGCCCGCCAA
  T
  CTGCACCACC CCCAGGAAGG ATCTGACCCA ACAGGACTAG GAGATGGGCT GTCACTTCTT
  TAAAGCAGCT CTTGCTGGGT TCAGAGTCTC AATAAATAA                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148379004	ENSMUSSNP4413931	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31420497					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:76170764 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8372	CpG island 8372	62 bp distal
Nrip1	nuclear receptor interacting protein 1	49 bp upstream
Rr325475	regulatory region 325475	within coordinates
Tssr139017	transcription start site region 139017	769 bp downstream
Tssr139018	transcription start site region 139018	663 bp downstream
Tssr141820	transcription start site region 141820	773 bp upstream
Tssr141821	transcription start site region 141821	24 bp upstream
Tssr141822	transcription start site region 141822	5 bp upstream
Tssr141823	transcription start site region 141823	within coordinates