rs3142162 SNP Detail

Summary

• ID
  rs3142162
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89021820 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGTGG CTAATTATGT GATCTCTCAG
  M
  TTCCTGCTCC CGTGGTCTGC TGTCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45896127	mCV23950324	ABI	CRAMUS_MOUSE	r	SNP	G	T	T	G
ss133368871	ENSMUSSNP5466804	ENSEMBL	ENSEMBL_Sanger	r	SNP		T		G
ss321851133	CHEV_6_88994832	CHEVERUD	SCREENING_POP	r	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3142162					SNP	C	A	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89021820 () rs orientation: reverse

Symbol	Name	Function Class
D6Mit248	DNA segment, Chr 6, Massachusetts Institute of Technology 248	1038 bp distal
Gm66902	predicted gene, 66902	within coordinates
Rr634071	regulatory region 634071	1498 bp distal
Rr634072	regulatory region 634072	1841 bp proximal