rs3142163 SNP Detail

Summary

• ID
  rs3142163
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89021639 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGTAT TGTATAATCC TAGTCATCTC
  K
  TGGCAATCTT AGGGCTCATC AGTTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45914954	mCV23950314	ABI	CRAMUS_MOUSE	r	SNP	A	C		C		A
ss51760675	NES14794666	PERLEGEN	MM_PANEL2	r	SNP	A		A		C	A	A		A	A		A
ss133368868	ENSMUSSNP2173108	ENSEMBL	ENSEMBL_Sanger	r	SNP		C				A
ss321851132	CHEV_6_88994651	CHEVERUD	SCREENING_POP	r	SNP								C			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs3142163					SNP	T	G	T	G	G	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51760675	NES14794666	PERLEGEN	MM_PANEL	r	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89021639 () rs orientation: reverse

Symbol	Name	Function Class
D6Mit248	DNA segment, Chr 6, Massachusetts Institute of Technology 248	857 bp distal
Gm66902	predicted gene, 66902	within coordinates
Rr634071	regulatory region 634071	1317 bp distal