rs3142164 SNP Detail

Summary

• ID
  rs3142164
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89021511 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGAGG CAGGCGGATT TCTGAGTTTG
  R
  GGCCAGCCTG GTCTACAAAG TGAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45892680	mCV23950313	ABI	CRAMUS_MOUSE	r	SNP	C	C	T
ss133368865	ENSMUSSNP3162033	ENSEMBL	ENSEMBL_Sanger	r	SNP	C		T
ss321851131	CHEV_6_88994523	CHEVERUD	SCREENING_POP	r	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3142164					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89021511 () rs orientation: reverse

Symbol	Name	Function Class
D6Mit248	DNA segment, Chr 6, Massachusetts Institute of Technology 248	729 bp distal
Gm66902	predicted gene, 66902	within coordinates
Rr634071	regulatory region 634071	1189 bp distal