rs3142167 SNP Detail

Summary

• ID
  rs3142167
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89019916 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTCGT CTTGGCCCCT CCACTACAGA
  Y
  GGGTTGGATG CATCTTTTCC TCTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45867738	mCV23950282	ABI	CRAMUS_MOUSE	r	SNP	A				A	G
ss51760684	NES14794708	PERLEGEN	MM_PANEL2	r	SNP	A	A	A	A			G	A		G	G	G		G
ss133368835	ENSMUSSNP4925577	ENSEMBL	ENSEMBL_Sanger	r	SNP	A					G
ss321851120	CHEV_6_88992928	CHEVERUD	SCREENING_POP	r	SNP									A				G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs3142167					SNP	T	T	T	T	T	C	C	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51760684	NES14794708	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89019916 () rs orientation: reverse

Symbol	Name	Function Class
D6Mit248	DNA segment, Chr 6, Massachusetts Institute of Technology 248	734 bp proximal
Gm66902	predicted gene, 66902	within coordinates
Rr634071	regulatory region 634071	within coordinates