rs31421677 SNP Detail

Summary

• ID
  rs31421677
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153363485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCC AGCACGCCCC GAGGGGGCGG
  S
  GCTTGAACCA CTTCCGGGCG CCAAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45030955	mCV25366593	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	C
ss145743758	ENSMUSSNP5846881	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31421677					SNP	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153363485 () rs orientation: forward

Symbol	Name	Function Class
Cpgi867	CpG island 867	within coordinates
Dhx9	DExH-box helicase 9	79 bp upstream
Rr396394	regulatory region 396394	within coordinates
Rr396395	regulatory region 396395	1359 bp upstream
Rr420682	regulatory region 420682	142 bp distal
Rr420683	regulatory region 420683	1486 bp distal
Rr420684	regulatory region 420684	204 bp distal
Rr420685	regulatory region 420685	within coordinates
Rr420686	regulatory region 420686	1181 bp proximal
Tssr9459	transcription start site region 9459	818 bp downstream
Tssr9460	transcription start site region 9460	37 bp upstream
Tssr14270	transcription start site region 14270	77 bp upstream
Tssr14271	transcription start site region 14271	58 bp upstream
Tssr14272	transcription start site region 14272	49 bp upstream