rs31422517 SNP Detail

Summary

• ID
  rs31422517
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:19131665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACAGAGGA GGACCCAGAA
  ACTCCAGGGC TATGTGAACC ATGGCCATGG CTGAAATTGT TTTTTTGGTT TTGGTTGTTA
  TTGTTGTTGT TGTGTTTGCT TTTTTAAGAT TTTTAGATTC TTTTTTATTA CATATTTCTT
  TATGTTTCAA ATGTTATCTC CTTTCCTGTT TGCCCTCTGA AAACCTCACC AACCTACCTA
  Y
  TCCCTCTTCC TTGTCCTGCC ATTTTCCTAT ACTGAGACAT CAAGCCTTCA CAAGATCAAG
  GGCCTCTCTT CCCACTGAAG TCCAACAAGG CCATCCTCTG CTAGAGGATG GGGCTAGAAC
  CATGTGTACT CTTGGGTTTG TGGTTTAATC CCTGGGAGCT CTGGGGTACT GGTTGGTTCA
  TATTGTTGTT CCTCCTATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45031908	mCV24125213	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss148699926	ENSMUSSNP1440672	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31422517					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19131665 () rs orientation: forward

Symbol	Name	Function Class
Gm15825	predicted gene 15825	1859 bp downstream
Gm28344	predicted gene 28344	1416 bp upstream