rs31423327 SNP Detail

Summary

• ID
  rs31423327
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65545023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCGGCGGC TCCCATTTAC
  TTGGATGGAT CAGACACGGC TCGGCTTGAG TGTGGAATCT TTTAGCTATT GCTGTTAATC
  CATGGAAAAT ACTTTAGTGT AATGTGTTCT CTTTTAAAGT TAATGAATTA TTGCAATAAA
  GAACAATGGG ATTTATTCAA TATGGTGGCC CTGAACCATG CCAAATATTT TGTGGTTTTC
  Y
  GGGAACACAA CAAGGTAGTT ATTGGTATCG TAATAAATGA GGGGCTTAGC GTTTCCCAGC
  TGCTGAACAC ATGATCATTA CTTGGGAGGA CAAATAGCAG GATTTTCTGT CCCTAAAGTG
  TAGCCTGCTC TAGATCTCCC TGCATAACTA GAGTGGACAA CTGGTGGAGG TAATAAAAAC
  CTATATTTCA TTTATTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45532204	mCV22851882	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31423327					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65545023 () rs orientation: forward

Symbol	Name	Function Class
Gm65444	predicted gene, 65444	1001 bp downstream
Rr577715	regulatory region 577715	1371 bp distal
Rr577716	regulatory region 577716	within coordinates
Rr577717	regulatory region 577717	1316 bp proximal
Rr577718	regulatory region 577718	1714 bp proximal
Tssr33467	transcription start site region 33467	1676 bp downstream