rs31423933 SNP Detail

Summary

• ID
  rs31423933
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:155090735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCTCTCCT GTTTGAAGTG TGGCTGTCCC TTTTGGTGCT
  TCTTGGCCAA GATGAGCCTT TCCAGTGAGG CCCTGTCTCT AAATAACCAA GCTCATAGTT
  Y
  TTTGGCAGAA GGCTTTCCCA GAGGGATCCT GCCCTGTCCT TCATCTCCTT TCTCGGATGC
  TTGAACAGCT TACCTGCTGG GACTACAGGC TGGTGGCAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45032495	mCV24606587	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss145777574	ENSMUSSNP5169239	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31423933					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:155090735 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
BC034090	cDNA sequence BC034090			Intron
				Noncoding-Transcript-Variant
Rr420974	regulatory region 420974			943 bp distal
Rr420975	regulatory region 420975			31 bp proximal
Rr420976	regulatory region 420976			562 bp proximal