rs31424115 SNP Detail

Summary

• ID
  rs31424115
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9466102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTT GGCACGTGAT GTCATGTGAT
  R
  AACACACTTG GGGCTGCCTC CAGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45532112	mCV23607709	ABI	CRAMUS_MOUSE	f	SNP	A	A	G						A
ss60369245	NES15871154	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	G	G	A	A	A		G	A	A	G		G
ss320650887	CHEV_3_9401042	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31424115					SNP	A	A	G	A	G	A	G	G	A	A	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60369245	NES15871154	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9466102 () rs orientation: forward

Symbol	Name	Function Class
C030034L19Rik	RIKEN cDNA C030034L19 gene	1978 bp upstream
Gm55345	predicted gene, 55345	1133 bp upstream
Rr374488	regulatory region 374488	979 bp downstream
Tssr28343	transcription start site region 28343	1952 bp upstream