rs31424442 SNP Detail

Summary

• ID
  rs31424442
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171975087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAAACTCTG CAGCGTTGAG CGCCTTTAAT CCTAATCCCA
  GCGCCTGAGA GGCAGAGGCA GGTGGGTGAT CTCTGTGAGA TCTACAGTTC CAGGACAGCC
  S
  GGGTAGAAAG ATCCTGTTTC AAATGAATAA ATAAATCCTG TTTCTAAGCC GTGTCACTCC
  CACCCCCAGG TGTGGGGATC AAACTTTTAA AACTTTTAG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45031546	mCV23114268	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	C	G
ss120006864	PARCsnp_1.17510	PARC_SEQ	INBRED	f	SNP				C	G
ss120009738	PARCsnp_1.07136	PARC_SEQ	INBRED	f	SNP				C	G
ss146182858	ENSMUSSNP977740	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss320122955	CHEV_1_174077651	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31424442					SNP	G	G	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171975087 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1037	CpG island 1037	317 bp proximal
Dcaf8	DDB1 and CUL4 associated factor 8	487 bp upstream
Gm70088	predicted gene, 70088	209 bp downstream
Rr372457	regulatory region 372457	within coordinates
Rr423469	regulatory region 423469	within coordinates
Rr423470	regulatory region 423470	457 bp proximal
Rr423471	regulatory region 423471	669 bp proximal
Tssr10170	transcription start site region 10170	517 bp upstream
Tssr10171	transcription start site region 10171	538 bp upstream
Tssr10172	transcription start site region 10172	578 bp upstream
Tssr10173	transcription start site region 10173	590 bp upstream
Tssr15148	transcription start site region 15148	403 bp downstream