rs3142508 SNP Detail

Summary

• ID
  rs3142508
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:30122073 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ATCAG TAGCGGTGTA GTTCCTCAAT
  R
  ATCCAGGGAT CTGGAGTCGC AAAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12758643	IKBns_JC7173_14	ROCHEBIO	RPAMM	r	SNP	T			C	C	C	C	C	C	C	C	C		C	T	T	C
ss46097393	mCV22814543	ABI	CRAMUS_MOUSE	r	SNP		T	T		C						C		C
ss148677543	ENSMUSSNP5271483	ENSEMBL	ENSEMBL_Sanger	r	SNP			T		C								C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs3142508					SNP	A	A	A	G	G	G	G	G	G	G	G	G	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30122073 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr400239	regulatory region 400239			794 bp downstream
Rr400240	regulatory region 400240			215 bp downstream
Rr644814	regulatory region 644814			906 bp distal
Rr644815	regulatory region 644815			232 bp distal
Rr644816	regulatory region 644816			137 bp proximal
Tssr2184	transcription start site region 2184			696 bp upstream
Tssr65714	transcription start site region 65714			906 bp downstream
Tssr65715	transcription start site region 65715			353 bp downstream
Tssr65716	transcription start site region 65716			217 bp downstream
Tssr65717	transcription start site region 65717			204 bp downstream
Tssr65718	transcription start site region 65718			178 bp downstream
Tssr65719	transcription start site region 65719			618 bp upstream
Tssr65720	transcription start site region 65720			657 bp upstream
Tssr65721	transcription start site region 65721			714 bp upstream
Tssr65722	transcription start site region 65722			733 bp upstream
Tssr65723	transcription start site region 65723			764 bp upstream
Tssr65724	transcription start site region 65724			780 bp upstream
Tssr65725	transcription start site region 65725			952 bp upstream
Tssr65726	transcription start site region 65726			959 bp upstream
Tssr65727	transcription start site region 65727			977 bp upstream
Tssr65728	transcription start site region 65728			1272 bp upstream
Tssr65729	transcription start site region 65729			1590 bp upstream
Tssr65730	transcription start site region 65730			1638 bp upstream
Tssr65731	transcription start site region 65731			1664 bp upstream
Tssr65732	transcription start site region 65732			1702 bp upstream
Tssr65733	transcription start site region 65733			1730 bp upstream
Tssr65734	transcription start site region 65734			1771 bp upstream
Tssr71745	transcription start site region 71745			1012 bp upstream