rs31425113 SNP Detail

Summary

• ID
  rs31425113
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26384965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAATGGAAG GAAAAAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  R
  AGAGAAAACA GTGGTACAGG CCAGAGCTCA TTAGAATAAT CACAAATGAA TCAAATATGG
  GACATATTTC CCTCATTCCA ATAACAGCCT AACTGCTTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss45532331	mCV22681615	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss320687274	CHEV_3_26229738	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs31425113					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26384965 () rs orientation: forward

Symbol	Name	Function Class
A830092H15Rik	RIKEN cDNA A830092H15 gene	334 bp upstream
Cpgi13015	CpG island 13015	478 bp proximal
Nlgn1	neuroligin 1	Intron
Rr574316	regulatory region 574316	within coordinates
Rr574317	regulatory region 574317	413 bp proximal
Rr574318	regulatory region 574318	977 bp proximal
Rr574319	regulatory region 574319	1083 bp proximal
Rr574320	regulatory region 574320	1634 bp proximal
Tssr32829	transcription start site region 32829	221 bp downstream
Tssr32830	transcription start site region 32830	684 bp downstream
Tssr32831	transcription start site region 32831	990 bp downstream
Tssr32832	transcription start site region 32832	1014 bp downstream
Tssr32833	transcription start site region 32833	1038 bp downstream
Tssr32834	transcription start site region 32834	1088 bp downstream
Tssr32835	transcription start site region 32835	1118 bp downstream